-
aCGH
2q23.1 microdeletion identified by array-CGH: an emerging phenotype with Angelman-like features?
J Med Genet. 2009 Dec;46(12):847-55. Epub 2008 Sep 23
Jaillard S, Dubourg C, Gérard-Blanluet M, Delahaye A, Pasquier L, Dupont C, Henry C, Tabet AC, Lucas J, Aboura A, David V, Benzacken B, Odent S, Pipiras E
December 1, 2009
-
aCGH
Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis.
PLoS One. 2009;4(2):e4583. Epub 2009 Feb 25
Graubert TA, Payton MA, Shao J, Walgren RA, Monahan RS, Frater JL, Walshauser MA, Martin MG, Kasai Y, Walter MJ
January 1, 2009
-
aCGH
Review of disrupted sleep patterns in Smith-Magenis syndrome and normal melatonin secretion in a patient with an atypical interstitial 17p11.2 deletion.
Am J Med Genet A. 2009 Jul;149A(7):1382-91
Boudreau EA, Johnson KP, Jackman AR, Blancato J, Huizing M, Bendavid C, Jones M, Chandrasekharappa SC, Lewy AJ, Smith AC, Magenis RE
July 1, 2009
-
aCGH
Identifying the molecular signature of the interstitial deletion 7q subgroup of uterine leiomyomata using a paired analysis.
Genes Chromosomes Cancer. 2009 Oct;48(10):865-85
Hodge JC, Park PJ, Dreyfuss JM, Assil-Kishawi I, Somasundaram P, Semere LG, Quade BJ, Lynch AM, Stewart EA, Morton CC
October 1, 2009
-
aCGH
Chromosome 8p23.1 deletions as a cause of complex congenital heart defects and diaphragmatic hernia.
Am J Med Genet A. 2009 Aug;149A(8):1661-77
Wat MJ, Shchelochkov OA, Holder AM, Breman AM, Dagli A, Bacino C, Scaglia F, Zori RT, Cheung SW, Scott DA, Kang SH
August 1, 2009
-
aCGH
Detection and characterization of NF1 microdeletions by custom high resolution array CGH.
J Mol Diagn. 2009 Nov;11(6):524-9. Epub 2009 Sep 18
Pasmant E, Sabbagh A, Masliah-Planchon J, Haddad V, Hamel MJ, Laurendeau I, Soulier J, Parfait B, Wolkenstein P, Bièche I, Vidaud M, Vidaud D
November 1, 2009
-
aCGH
Generation of mesenchymal stromal cells in the presence of platelet lysate: a phenotypic and functional comparison of umbilical cord blood- and bone marrow-derived progenitors.
Haematologica. 2009 Dec;94(12):1649-60. Epub 2009 Sep 22
Avanzini MA, Bernardo ME, Cometa AM, Perotti C, Zaffaroni N, Novara F, Visai L, Moretta A, Del Fante C, Villa R, Ball LM, Fibbe WE, Maccario R, Locatelli F
December 1, 2009
-
aCGH
Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously.
BMC Bioinformatics. 2009 Sep 23;10:308
Rueda OM, Diaz-Uriarte R
September 23, 2009
-
aCGH
Identification of copy number variants defining genomic differences among major human groups.
PLoS One. 2009 Sep 30;4(9):e7230
Armengol L, Villatoro S, González JR, Pantano L, García-Aragonés M, Rabionet R, Cáceres M, Estivill X
September 30, 2009
-
aCGH
Identification of Key Regions and Genes Important in the Pathogenesis of Sezary Syndrome by Combining Genomic and Expression Gene Expressions.
Cancer Res. 2009 Nov 1;69(21):8438-46. Epub 2009 Oct 20
Caprini E, Cristofoletti C, Arcelli D, Fadda P, Citterich MH, Sampogna F, Magrelli A, Censi F, Torreri P, Frontani M, Scala E, Picchio MC, Temperani P, Monopoli A, Lombardo GA, Taruscio D, Narducci MG, Russo G
November 1, 2009
-
aCGH
Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples.
Nucleic Acids Res. 2009 Oct 29
Hostetter G, Kim SY, Savage S, Gooden GC, Barrett M, Zhang J, Alla L, Watanabe A, Einspahr J, Prasad A, Nickoloff BJ, Carpten J, Trent J, Alberts D, Bittner M
October 29, 2009
-
aCGH
Recurrent microdeletion at 17q12 as a cause of Mayer-Rokitansky-Kuster-Hauser (MRKH) syndrome: two case reports.
Orphanet J Rare Dis. 2009 Nov 4;4:25
Bernardini L, Gimelli S, Gervasini C, Carella M, Baban A, Frontino G, Barbano G, Divizia MT, Fedele L, Novelli A, Béna F, Lalatta F, Miozzo M, Dallapiccola B
November 4, 2009
-
aCGH
A small supernumerary marker chromosome present in a Turner syndrome patient not derived from X- or Y-chromosome: a case report.
Mol Cytogenet. 2009 Nov 12;2:22
Sheth F, Ewers E, Kosyakova N, Weise A, Sheth J, Desai M, Andrieux J, Vermeesch J, Hamid AB, Ziegler M, Liehr T
November 10, 2009
-
aCGH
Glioblastoma subclasses can be defined by activity among signal transduction pathways and associated genomic alterations.
PLoS One. 2009 Nov 13;4(11):e7752
Brennan C, Momota H, Hambardzumyan D, Ozawa T, Tandon A, Pedraza A, Holland E
November 13, 2009
-
aCGH
Detection of pathogenic copy number variants in children with idiopathic intellectual disability using 500 K SNP array genomic hybridization.
BMC Genomics. 2009 Nov 16;10:526
Friedman J, Adam S, Arbour L, Armstrong L, Baross A, Birch P, Boerkoel C, Chan S, Chai D, Delaney AD, Flibotte S, Gibson WT, Langlois S, Lemyre E, Li HI, MacLeod P, Mathers J, Michaud JL, McGillivray BC, Patel MS, Qian H, Rouleau GA, Van Allen MI, Yong SL, Zahir FR, Eydoux P, Marra MA
November 16, 2009
-
CGH
Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage.
Biol Direct. 2009 Jan 13;4:1
Rolain JM, François P, Hernandez D, Bittar F, Richet H, Fournous G, Mattenberger Y, Bosdure E, Stremler N, Dubus JC, Sarles J, Reynaud-Gaubert M, Boniface S, Schrenzel J, Raoult D
January 13, 2009
-
CGH
The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants.
PLoS Pathog. 2009 May;5(5):e1000408. Epub 2009 May 1
Asadulghani M, Ogura Y, Ooka T, Itoh T, Sawaguchi A, Iguchi A, Nakayama K, Hayashi T
May 1, 2009
-
CGH
Genomic disorders ten years on.
Genome Med. 2009 Apr 24;1(4):42
Lupski JR
April 24, 2009
-
CGH
P58(IPK): a novel "CIHD" member of the host innate defense response against pathogenic virus infection.
PLoS Pathog. 2009 May;5(5):e1000438. Epub 2009 May 22
Goodman AG, Fornek JL, Medigeshi GR, Perrone LA, Peng X, Dyer MD, Proll SC, Knoblaugh SE, Carter VS, Korth MJ, Nelson JA, Tumpey TM, Katze MG
May 1, 2009
-
CGH
Different molecular mechanisms causing 9p21 deletions in acute lymphoblastic leukemia of childhood.
Hum Genet. 2009 Oct;126(4):511-20. Epub 2009 May 30
Novara F, Beri S, Bernardo ME, Bellazzi R, Malovini A, Ciccone R, Cometa AM, Locatelli F, Giorda R, Zuffardi O
October 1, 2009
-
CGH
High resolution genomic analysis of 18q- using oligo-Gene Expression comparative genomic hybridization (aCGH).
Am J Med Genet A. 2009 Jul;149A(7):1431-7
Heard PL, Carter EM, Crandall AC, Sebold C, Hale DE, Cody JD
July 1, 2009
-
CGH
RCP is a human breast cancer-promoting gene with Ras-activating function.
J Clin Invest. 2009 Aug;119(8):2171-83. doi: 10.1172/JCI37622. Epub 2009 Jul 20
Zhang J, Liu X, Datta A, Govindarajan K, Tam WL, Han J, George J, Wong C, Ramnarayanan K, Phua TY, Leong WY, Chan YS, Palanisamy N, Liu ET, Karuturi KM, Lim B, Miller LD
August 1, 2009
-
CGH
Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of prostate cancer.
Mol Cytogenet. 2009 Sep 26;2:18
Yi Y, Nandana S, Case T, Nelson C, Radmilovic T, Matusik RJ, Tsuchiya KD
September 26, 2009
-
CGH
TET2 gene mutation is a frequent and adverse event in chronic myelomonocytic leukemia.
Haematologica. 2009 Dec;94(12):1676-1681. Epub 2009 Oct 1
Kosmider O, Gelsi-Boyer V, Ciudad M, Racoeur C, Jooste V, Vey N, Quesnel B, Fenaux P, Bastie JN, Beyne-Rauzy O, Stamatoulas A, Dreyfus F, Ifrah N, de Botton S, Vainchenker W, Bernard OA, Birnbaum D, Fontenay M, Solary E; on behalf of the Groupe Francophone des Myélodysplasies
December 1, 2009
-
ChIP-on-chip
An integrative ChIP-on-chip and gene expression profiling to model SMAD regulatory modules.
BMC Syst Biol. 2009 Jul 17;3:73
Qin H, Chan MW, Liyanarachchi S, Balch C, Potter D, Souriraj IJ, Cheng AS, Agosto-Perez FJ, Nikonova EV, Yan PS, Lin HJ, Nephew KP, Saltz JH, Showe LC, Huang TH, Davuluri RV
July 17, 2009
-
ChIP-on-chip
Zfp206, Oct4 and Sox2 are integrated components of a transcriptional regulatory network in embryonic stem cells.
J Biol Chem. 2009 Nov 6;284(45):31327-35. Epub 2009 Sep 9
Yu HB, Kunarso G, Hong FH, Stanton LW
November 6, 2009
-
CNV
Allele-specific gene expression is widespread across the genome and biological processes.
PLoS One. 2009;4(1):e4150. Epub 2009 Jan 7
Palacios R, Gazave E, Goñi J, Piedrafita G, Fernando O, Navarro A, Villoslada P
January 1, 2009
-
CNV/CGH
The genetics of childhood-onset schizophrenia: when madness strikes the prepubescent.
Curr Psychiatry Rep. 2009 Apr;11(2):156-61
Addington AM, Rapoport JL
April 1, 2009
-
DNA methylation
Integrated analysis of DNA DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer.
BMC Med Genomics. 2009 Jun 8;2:34
Li M, Balch C, Montgomery JS, Jeong M, Chung JH, Yan P, Huang TH, Kim S, Nephew KP
June 8, 2009
-
DNA methylation
Specific promoter DNA methylation identifies different subgroups of MLL-rearranged infant acute lymphoblastic leukemia, influences clinical outcome, and provides therapeutic options.
Blood. 2009 Oct 23
Stumpel DJ, Schneider P, van Roon EH, Boer JM, de Lorenzo P, Valsecchi MG, de Menezes RX, Pieters R, Stam RW
October 23, 2009
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Gene Expression
The DNA-encoded nucleosome organization of a eukaryotic genome.
Nature. 2009 Mar 19;458(7236):362-6. Epub 2008 Dec 17
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E
February 6, 2009
-
Gene Expression
Genome-wide platelet RNA profiling in clinical samples.
Methods Mol Biol. 2009;496:273-83
Schedel A, Rolf N
January 1, 2009
-
Gene Expression
High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model.
Epigenetics Chromatin. 2009 Jan 29;2(1):1
Vogel MJ, Pagie L, Talhout W, Nieuwland M, Kerkhoven RM, van Steensel B
January 29, 2009
-
Gene Expression
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.
Nat Biotechnol. 2009 Feb;27(2):182-9. Epub 2009 Feb 1
Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, Gabriel S, Jaffe DB, Lander ES, Nusbaum C
February 1, 2009
-
Gene Expression
Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation.
BMC Syst Biol. 2009 Feb 18;3:20
Huang AC, Hu L, Kauffman SA, Zhang W, Shmulevich I
January 1, 2009
-
Gene Expression
Urothelial transdifferentiation to prostate epithelia is mediated by paracrine TGF-beta signaling.
Differentiation. 2009 Jan;77(1):95-102. Epub 2008 Oct 25
Li X, Wang Y, Sharif-Afshar AR, Uwamariya C, Yi A, Ishii K, Hayward SW, Matusik RJ, Bhowmick NA
January 1, 2009
-
Gene Expression
Evidence that human blastomere cleavage is under unique cell cycle control.
J Assist Reprod Genet. 2009 Apr;26(4):187-95. Epub 2009 Mar 14
Kiessling AA, Bletsa R, Desmarais B, Mara C, Kallianidis K, Loutradis D
April 1, 2009
-
Gene Expression
Identification of novel cyclooxygenase-2-dependent genes in Helicobacter pylori infection in vivo.
Mol Cancer. 2009 Mar 24;8:22
Walduck AK, Weber M, Wunder C, Juettner S, Stolte M, Vieth M, Wiedenmann B, Meyer TF, Naumann M, Hoecker M
March 24, 2009
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Gene Expression
Detection of genomic deletions in rice using oligonucleotide Gene Expressions.
BMC Genomics. 2009 Mar 25;10:129
Bruce M, Hess A, Bai J, Mauleon R, Diaz MG, Sugiyama N, Bordeos A, Wang GL, Leung H, Leach JE
March 25, 2009
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Gene Expression
Gene expression profiles of human liver cells mediated by hepatitis B virus X protein.
Acta Pharmacol Sin. 2009 Apr;30(4):424-34
Zhang WY, Xu FQ, Shan CL, Xiang R, Ye LH, Zhang XD
April 1, 2009
-
Gene Expression
Conservation of core gene expression in vertebrate tissues.
J Biol. 2009;8(3):33. Epub 2009 Apr 16
Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR
January 1, 2009
-
Gene Expression
A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.
PLoS Comput Biol. 2009 May;5(5):e1000382. Epub 2009 May 1
Hudson NJ, Reverter A, Dalrymple BP
May 1, 2009
-
Gene Expression
TU-tagging: cell type-specific RNA isolation from intact complex tissues.
Nat Methods. 2009 Jun;6(6):439-41. Epub 2009 May 10
Miller MR, Robinson KJ, Cleary MD, Doe CQ
June 1, 2009
-
Gene Expression
Effect of a glucose impulse on the CcpA regulon in Staphylococcus aureus.
BMC Microbiol. 2009 May 18;9:95
Seidl K, Müller S, François P, Kriebitzsch C, Schrenzel J, Engelmann S, Bischoff M, Berger-Bächi B
May 18, 2009
-
Gene Expression
Suppression of Annexin A11 in Ovarian Cancer: Implications in Chemoresistance.
Neoplasia. 2009 Jun;11(6):605-14, 1 p following 614
Song J, Shih IeM, Chan DW, Zhang Z
June 1, 2009
-
Gene Expression
Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection.
BMC Genomics. 2009 Jun 5;10:257
Baton LA, Robertson A, Warr E, Strand MR, Dimopoulos G
June 5, 2009
-
Gene Expression
DNA hyperDNA methylation accompanied by transcriptional repression in follicular lymphoma.
Genes Chromosomes Cancer. 2009 Sep;48(9):828-41
Bennett LB, Schnabel JL, Kelchen JM, Taylor KH, Guo J, Arthur GL, Papageorgio CN, Shi H, Caldwell CW
September 1, 2009
-
Gene Expression
Photorespiratory 2-phosphoglycolate metabolism and photoreduction of O(2) cooperate in high-light acclimation of Synechocystis sp. strain PCC 6803.
Planta. 2009 Sep;230(4):625-37. Epub 2009 Jul 4
Hackenberg C, Engelhardt A, Matthijs HC, Wittink F, Bauwe H, Kaplan A, Hagemann M
September 1, 2009
-
Gene Expression
Microdeletions including YWHAE in the Miller-Dieker syndrome region on chromosome 17p13.3 result in facial dysmorphisms, growth restriction, and cognitive impairment.
J Med Genet. 2009 Dec;46(12):825-33. Epub 2009 Jul 6
Nagamani SC, Zhang F, Shchelochkov OA, Bi W, Ou Z, Scaglia F, Probst FJ, Shinawi M, Eng C, Hunter JV, Sparagana S, Lagoe E, Fong CT, Pearson M, Doco-Fenzy M, Landais E, Mozelle M, Chinault AC, Patel A, Bacino CA, Sahoo T, Kang SH, Cheung SW, Lupski JR, Stankiewicz P
December 1, 2009
-
Gene Expression
Profiling Muscle-specific Microrna Expression After Peripheral Denervation And Re-innervation In A Rat Model.
J Neurotrauma. 2009 Dec 6. [Epub ahead of print]
Jeng SF, Rau CS, Liliang PC, Wu CJ, Lu TH, Chen YC, Lin CJ, Hsieh CH
December 6, 2009
-
Gene Expression
Gene remodeling in type 2 diabetic cardiomyopathy and its phenotypic rescue with SERCA2a.
PLoS One. 2009 Jul 31;4(7):e6474
Karakikes I, Kim M, Hadri L, Sakata S, Sun Y, Zhang W, Chemaly ER, Hajjar RJ, Lebeche D
July 31, 2009
-
Gene Expression
Comprehensive Identification of Salmonella enterica Serovar Typhimurium Genes Required for Infection of BALB/c Mice.
PLoS Pathog. 2009 Jul;5(7):e1000529. Epub 2009 Jul 31
Chaudhuri RR, Peters SE, Pleasance SJ, Northen H, Willers C, Paterson GK, Cone DB, Allen AG, Owen PJ, Shalom G, Stekel DJ, Charles IG, Maskell DJ
July 1, 2009
-
Gene Expression
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands.
Genome Res. 2009 Nov;19(11):1974-82. Epub 2009 Aug 3
Takeshima H, Yamashita S, Shimazu T, Niwa T, Ushijima T
November 1, 2009
-
Gene Expression
Allele-specific DNA DNA methylation in mouse strains is mainly determined by cis-acting sequences.
Genome Res. 2009 Nov;19(11):2028-35. Epub 2009 Aug 17
Schilling E, El Chartouni C, Rehli M
November 1, 2009
-
Gene Expression
Identification of novel endogenous antisense transcripts by DNA Gene Expression analysis targeting complementary strand of annotated genes.
BMC Genomics. 2009 Aug 22;10:392
Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K, Kiyosawa H
August 22, 2009
-
gene expression
A flexible whole-genome Gene Expression for transcriptomics in three-spine stickleback (Gasterosteus aculeatus).
BMC Genomics. 2009 Sep 11;10:426
Leder EH, Merilä J, Primmer CR
September 11, 2009
-
Gene Expression
Comparison of diverse developmental transcriptomes reveals that co-expression of gene neighbors is not evolutionarily conserved.
Genome Res. 2009 Dec;19(12):2214-20. Epub 2009 Sep 10
Yanai I, Hunter CP
December 1, 2009
-
Gene Expression
Transcriptome analysis of the responses of Staphylococcus aureus to antimicrobial peptides and characterization of the roles of vraDE and vraSR in antimicrobial resistance.
BMC Genomics. 2009 Sep 14;10:429
Pietiäinen M, François P, Hyyryläinen HL, Tangomo M, Sass V, Sahl HG, Schrenzel J, Kontinen VP
July 14, 2009
-
gene expression
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation.
Mol Syst Biol. 2009;5:305. Epub 2009 Sep 15
Georg J, Voss B, Scholz I, Mitschke J, Wilde A, Hess WR
January 1, 2009
-
Gene Expression
Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia.
BMC Genomics. 2009 Sep 17;10:441
O'Grady EP, Viteri DF, Malott RJ, Sokol PA
September 17, 2009
-
Gene Expression
Quadruple 9-mer-based protein binding Gene Expression with DsRed fusion protein.
BMC Mol Biol. 2009 Sep 18;10:91
Kim MJ, Lee TH, Pahk YM, Kim YH, Park HM, Choi YD, Nahm BH, Kim YK
September 18, 2009
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Gene Expression
Fast Growth Increases the Selective Advantage of a Mutation Arising Recurrently during Evolution under Metal Limitation.
PLoS Genet. 2009 Sep;5(9):e1000652. Epub 2009 Sep 18
Chou HH, Berthet J, Marx CJ
September 1, 2009
-
Gene Expression
Gene Expression Analysis Identifies Changes in Inflammatory Gene Expression in Response to Amyloid-Beta Stimulation of Cultured Human Retinal Pigment Epithelial Cells.
Invest Ophthalmol Vis Sci. 2009 Sep 24
Kurji K, Cui J, Lin T, Harriman D, Prasad S, Kojic L, Matsubara J
September 24, 2009
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Gene Expression
Tumor suppressor protein SMAR1 modulates the roughness of cell surface: combined AFM and SEM study.
BMC Cancer. 2009 Oct 2;9:350
Kaul-Ghanekar R, Singh S, Mamgain H, Jalota-Badhwar A, Paknikar KM, Chattopadhyay S
October 2, 2009
-
Gene Expression
A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae.
Genome Res. 2009 Dec;19(12):2245-57. Epub 2009 Oct 2
Berchowitz LE, Hanlon SE, Lieb JD, Copenhaver GP
December 1, 2009
-
Gene Expression
High Temperatures Cause Male Sterility in Rice Plants with Transcriptional Alterations during Pollen Development.
Plant Cell Physiol. 2009 Nov;50(11):1911-22. Epub 2009 Oct 6
Endo M, Tsuchiya T, Hamada K, Kawamura S, Yano K, Ohshima M, Higashitani A, Watanabe M, Kawagishi-Kobayashi M
November 1, 2009
-
Gene Expression
Deficit of heat shock transcription factor 1-heat shock 70 kDa protein 1A axis determines the cell death vulnerability in a model of spinocerebellar ataxia type 6.
Genes Cells. 2009 Nov;14(11):1253-69. Epub 2009 Oct 8
Li L, Saegusa H, Tanabe T
November 1, 2009
-
Gene Expression
Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.
PLoS One. 2009 Oct 14;4(10):e7458
Sapriel G, Quinet M, Heijde M, Jourdren L, Tanty V, Luo G, Le Crom S, Lopez PJ
October 14, 2009
-
Gene Expression
Design and Performance of a Turbot (Scophthalmus maximus) Oligo-Gene Expression Based on ESTs from Immune Tissues.
Mar Biotechnol (NY). 2009 Oct 21
Millán A, Gómez-Tato A, Fernández C, Pardo BG, Alvarez-Dios JA, Calaza M, Bouza C, Vázquez M, Cabaleiro S, Martínez P
October 21, 2009
-
Gene Expression
A New Paradigm for MAPK: Structural Interactions of hERK1 with Mitochondria in HeLa Cells.
PLoS One. 2009 Oct 22;4(10):e7541
Galli S, Jahn O, Hitt R, Hesse D, Opitz L, Plessmann U, Urlaub H, Poderoso JJ, Jares-Erijman EA, Jovin TM
October 22, 2009
-
Gene Expression
HspR Mutations Are Naturally Selected in Bifidobacterium longum When Applying Successive Heat-Shock Treatments.
J Bacteriol. 2009 Oct 30
Berger B, Moine D, Mansourian R, Arigoni F
October 30, 2009
-
Gene Expression
A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice.
Plant Cell. 2009 Oct;21(10):3339-49. Epub 2009 Oct 30
Yamaji N, Huang CF, Nagao S, Yano M, Sato Y, Nagamura Y, Ma JF
October 1, 2009
-
Gene Expression
HE3235 inhibits growth of castration-resistant prostate cancer.
Neoplasia. 2009 Nov;11(11):1216-25
Koreckij TD, Trauger RJ, Montgomery RB, Pitts TE, Coleman I, Nguyen H, Reading CL, Nelson PS, Vessella RL, Corey E
November 1, 2009
-
Gene Expression
Telomere shortening relaxes X chromosome inactivation and forces global transcriptome alterations.
Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19393-8. Epub 2009 Nov 3
Schoeftner S, Blanco R, de Silanes IL, Muñoz P, Gómez-López G, Flores JM, Blasco MA
November 17, 2009
-
Gene Expression
An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum.
PLoS One. 2009 Nov 3;4(11):e7743
Nymark M, Valle KC, Brembu T, Hancke K, Winge P, Andresen K, Johnsen G, Bones AM
November 3, 2009
-
Gene Expression
Role of oxidoreductases Bdh1p and Ara1p, from Saccharomyces cerevisiae in the metabolism of acetoin and 2, 3-butanediol.
Appl Environ Microbiol. 2009 Dec 4
González E, Fernández MR, Marco D, Calam E, Sumoy L, Parés X, Dequin S, Biosca JA
December 4, 2009
-
Gene Expression
Effects of reduced frequency of milk removal on gene expression in the bovine mammary gland.
Physiol Genomics. 2009 Dec 8
Littlejohn MD, Walker CG, Ward HE, Lehnert KB, Snell RG, Verkerk GA, Spelman RJ, Clark DA, Davis SR
December 8, 2009
-
GeneSpring
Global microsatellite content distinguishes humans, primates, animals, and plants.
Mol Biol Evol. 2009 Dec;26(12):2809-19. Epub 2009 Aug 28
Galindo CL, McIver LJ, McCormick JF, Skinner MA, Xie Y, Gelhausen RA, Ng K, Kumar NM, Garner HR
December 1, 2009
-
GeneSpring
The instructive role of metanephric mesenchyme in ureteric bud patterning, sculpting, and maturation and its potential ability to buffer ureteric bud branching defects.
Am J Physiol Renal Physiol. 2009 Nov;297(5):F1330-41. Epub 2009 Sep 2
Shah MM, Tee JB, Meyer T, Meyer-Schwesinger C, Choi Y, Sweeney DE, Gallegos TF, Johkura K, Rosines E, Kouznetsova V, Rose DW, Bush KT, Sakurai H, Nigam SK
November 1, 2009
-
GeneSpring
Widespread occurrence of chromosomal aneuploidy following the routine production of Candida albicans mutants.
FEMS Yeast Res. 2009 Oct;9(7):1070-7. Epub 2009 Aug 6
Arbour M, Epp E, Hogues H, Sellam A, Lacroix C, Rauceo J, Mitchell A, Whiteway M, Nantel A
October 1, 2009
-
GeneSpring
Networking of differentially expressed genes in human cancer cells resistant to methotrexate.
Genome Med. 2009 Sep 4;1(9):83
Selga E, Oleaga C, Ramírez S, de Almagro MC, Noé V, Ciudad CJ
September 4, 2009
-
GeneSpring
GATA3 is a master regulator of the transcriptional response to low-dose ionizing radiation in human keratinocytes.
BMC Genomics. 2009 Sep 7;10:417
Bonin F, Molina M, Malet C, Ginestet C, Berthier-Vergnes O, Martin MT, Lamartine J
September 7, 2009
-
GeneSpring
Heterologous oligonucleotide Gene Expressions for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa.
BMC Genomics. 2009 Sep 16;10:436
Davey MW, Graham NS, Vanholme B, Swennen R, May ST, Keulemans J
September 16, 2009
-
GeneSpring
Tnni3k modifies disease progression in murine models of cardiomyopathy.
PLoS Genet. 2009 Sep;5(9):e1000647. Epub 2009 Sep 18
Wheeler FC, Tang H, Marks OA, Hadnott TN, Chu PL, Mao L, Rockman HA, Marchuk DA
September 1, 2009
-
GeneSpring
Rapamycin response in tumorigenic and non-tumorigenic hepatic cell lines.
PLoS One. 2009 Oct 9;4(10):e7373
Jimenez RH, Boylan JM, Lee JS, Francesconi M, Castellani G, Sanders JA, Gruppuso PA
October 9, 2009
-
GeneSpring
Retinoblastoma protein plays multiple essential roles in the terminal differentiation of Sertoli cells.
Mol Endocrinol. 2009 Nov;23(11):1900-13. Epub 2009 Oct 9
Nalam RL, Andreu-Vieyra C, Braun RE, Akiyama H, Matzuk MM
November 1, 2009
-
GeneSpring
Transcriptome profiling defines a novel regulon modulated by the LysR-type transcriptional regulator MexT in Pseudomonas aeruginosa.
Nucleic Acids Res. 2009 Oct 21
Tian ZX, Fargier E, Mac Aogáin M, Adams C, Wang YP, O'Gara F
October 21, 2009
-
GeneSpring
Gain in brain immunity in the oldest-old differentiates cognitively normal from demented individuals.
PLoS One. 2009 Oct 29;4(10):e7642
Katsel P, Tan W, Haroutunian V
October 29, 2009
-
GeneSpring
A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells.
PLoS One. 2009 Nov 5;4(11):e7708
Hough SR, Laslett AL, Grimmond SB, Kolle G, Pera MF
November 5, 2009
-
GeneSpring
Efficient reprogramming of human and mouse primary extra-embryonic cells to pluripotent stem cells.
Genes Cells. 2009 Dec;14(12):1395-404. Epub 2009 Nov 13
Nagata S, Toyoda M, Yamaguchi S, Hirano K, Makino H, Nishino K, Miyagawa Y, Okita H, Kiyokawa N, Nakagawa M, Yamanaka S, Akutsu H, Umezawa A, Tada T
December 1, 2009
-
GeneSpring
Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPAR-gamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism.
BMC Genomics. 2009 Nov 19;10:542
Moyes KM, Drackley JK, Morin DE, Bionaz M, Rodriguez-Zas SL, Everts RE, Lewin HA, Loor JJ
November 19, 2009
-
GeneSpring
Divergent Mechanisms Controlling Hypoxic Sensitivity and Lifespan by the DAF-2/Insulin/IGF-Receptor Pathway.
PLoS One. 2009 Nov 20;4(11):e7937
Mabon ME, Scott BA, Crowder CM
November 20, 2009
-
GeneSpring, ChIP-on-chip
Transcriptional Regulation of Carbohydrate Metabolism in the Human Pathogen Candida albicans.
PLoS Pathog. 2009 Oct;5(10):e1000612. Epub 2009 Oct 9
Askew C, Sellam A, Epp E, Hogues H, Mullick A, Nantel A, Whiteway M
October 1, 2009
-
miRNA
Hodgkin Lymphoma Cell Lines Are Characterized by a Specific miRNA Expression Profile.
Neoplasia. 2009 Feb;11(2):167-76
Gibcus JH, Tan LP, Harms G, Schakel RN, de Jong D, Blokzijl T, Möller P, Poppema S, Kroesen BJ, van den Berg A.
February 1, 2009
-
miRNA
MicroRNA fingerprints identify miR-150 as a plasma prognostic marker in patients with sepsis.
PLoS One. 2009 Oct 12;4(10):e7405
Vasilescu C, Rossi S, Shimizu M, Tudor S, Veronese A, Ferracin M, Nicoloso MS, Barbarotto E, Popa M, Stanciulea O, Fernandez MH, Tulbure D, Bueso-Ramos CE, Negrini M, Calin GA
October 12, 2009
-
miRNA
miR-449a and miR-449b are direct transcriptional targets of E2F1 and negatively regulate pRb-E2F1 activity through a feedback loop by targeting CDK6 and CDC25A.
Genes Dev. 2009 Oct 15;23(20):2388-93
Yang X, Feng M, Jiang X, Wu Z, Li Z, Aau M, Yu Q
October 15, 2009
-
miRNA
Novel Rank-Based Statistical Methods Reveal MicroRNAs with Differential Expression in Multiple Cancer Types.
PLoS One. 2009 Nov 25;4(11):e8003
Navon R, Wang H, Steinfeld I, Tsalenko A, Ben-Dor A, Yakhini Z
November 25, 2009
-
miRNA Gene Expression
Analysis of chromosomal aberration (1, 3, and 8) and association of microRNAs in uveal melanoma.
Mol Vis. 2009 Oct 22;15:2146-54
Radhakrishnan A, Badhrinarayanan N, Biswas J, Krishnakumar S
October 22, 2009
-
sample quality
Gene Expression Profiling Reveals a Diverse Array of Pathways Inhibited by Nuclear Receptor SHP during Adipogenesis.
Int J Clin Exp Pathol. 2009;2(3):275-85. Epub 2008 Nov 3
Song G, Park K, Wang L
January 1, 2009
-
sample quality
Integrated analysis of breast cancer cell lines reveals unique signaling pathways.
Genome Biol. 2009;10(3):R31. Epub 2009 Mar 25
Heiser LM, Wang NJ, Talcott CL, Laderoute KR, Knapp M, Guan Y, Hu Z, Ziyad S, Weber BL, Laquerre S, Jackson JR, Wooster RF, Kuo WL, Gray JW, Spellman PT
January 1, 2009
-
sample quality
Transcriptomic and metabolic responses of Staphylococcus aureus exposed to supra-physiological temperatures.
BMC Microbiol. 2009 Apr 22;9:76
Fleury B, Kelley WL, Lew D, Götz F, Proctor RA, Vaudaux P
April 22, 2009
-
sample quality
Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events.
BMC Genomics. 2009 Jun 17;10:270
Albuquerque SS, Carret C, Grosso AR, Tarun AS, Peng X, Kappe SH, Prudêncio M, Mota MM
June 17, 2009
-
Sample Quality
Differential gene expression in the pig limbal side population; implications for stem cell cycling, replication and survival.
Invest Ophthalmol Vis Sci. 2009 Dec;50(12):5630-8. Epub 2009 Jul 15
Akinci MA, Turner H, Taveras M, Wolosin JM
October 15, 2009
-
Sample Quality
Identification of brain transcriptional variation reproduced in peripheral blood: an approach for mapping brain expression traits.
Hum Mol Genet. 2009 Nov 15;18(22):4415-27. Epub 2009 Aug 19
Jasinska AJ, Service S, Choi OW, DeYoung J, Grujic O, Kong SY, Jorgensen MJ, Bailey J, Breidenthal S, Fairbanks LA, Woods RP, Jentsch JD, Freimer NB
November 15, 2009
-
Sample Quality
Functional whole-genome analysis identifies Polo-like kinase 2 and poliovirus receptor as essential for neuronal differentiation upstream of the negative regulator alphaB-crystallin.
J Biol Chem. 2009 Nov 13;284(46):32053-65. Epub 2009 Aug 21
Draghetti C, Salvat C, Zanoguera F, Curchod ML, Vignaud C, Peixoto H, Di Cara A, Fischer D, Dhanabal M, Andreas G, Abderrahim H, Rommel C, Camps M
November 13, 2009
-
Sample Quality
Comparison of rat olfactory mucosal responses to carcinogenic and non-carcinogenic chloracetanilides
Food Chem Toxicol. 2009 Jan 28
Genter MB, Warner BM, Medvedovic M, Sartor MA
January 28, 2009
-
Sample Quality
Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis.
J Biol Chem. 2009 Oct 30;284(44):30383-94. Epub 2009 Sep 1
Giannakis M, Bäckhed HK, Chen SL, Faith JJ, Wu M, Guruge JL, Engstrand L, Gordon JI
October 30, 2009
-
Sample Quality
Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions.
BMC Genomics. 2009 Sep 2;10:410
Wecker P, Klockow C, Ellrott A, Quast C, Langhammer P, Harder J, Glöckner FO
September 2, 2009
-
sample quality
Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells.
BMC Med Genomics. 2009 Sep 10;2:58
Nehmé A, Lobenhofer EK, Stamer WD, Edelman JL
September 10, 2009
-
Sample Quality
Gene array analysis of adrenal glands in broiler chickens following ACTH treatment.
BMC Genomics. 2009 Sep 14;10:430
Bureau C, Hennequet-Antier C, Couty M, Guémené D
September 14, 2009
-
Sample Quality
New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis.
BMC Genomics. 2009 Sep 15;10:434
Tingaud-Sequeira A, Chauvigné F, Lozano J, Agulleiro MJ, Asensio E, Cerdà J
September 15, 2009
-
Sample Quality
Fibroblasts from patients with Diamond-Blackfan anaemia show abnormal expression of genes involved in protein synthesis, amino acid metabolism and cancer.
BMC Genomics. 2009 Sep 18;10:442
Avondo F, Roncaglia P, Crescenzio N, Krmac H, Garelli E, Armiraglio M, Castagnoli C, Campagnoli MF, Ramenghi U, Gustincich S, Santoro C, Dianzani I
September 18, 2009
-
Sample Quality
Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets.
Genome Res. 2009 Nov;19(11):2009-20. Epub 2009 Sep 18
Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M
November 1, 2009
-
Sample Quality
Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
BMC Plant Biol. 2009 Sep 22;9:120
Berri S, Abbruscato P, Faivre-Rampant O, Brasileiro AC, Fumasoni I, Satoh K, Kikuchi S, Mizzi L, Morandini P, Pè ME, Piffanelli P
September 22, 2009
-
Sample Quality
Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae.
Microb Cell Fact. 2009 Sep 24;8:49
Runquist D, Hahn-Hägerdal B, Bettiga M
September 24, 2009
-
Sample Quality
'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine.
BMC Genomics. 2009 Oct 2;10:460
Hren M, Nikolić P, Rotter A, Blejec A, Terrier N, Ravnikar M, Dermastia M, Gruden K
October 2, 2009
-
Sample Quality
High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.
BMC Genet. 2009 Oct 5;10:63
Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R
October 5, 2009
-
Sample Quality
An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction.
J Neurosci. 2009 Oct 7;29(40):12467-76
Gersten M, Alirezaei M, Marcondes MC, Flynn C, Ravasi T, Ideker T, Fox HS
October 7, 2009
-
Sample Quality
A simple method for directional transcriptome sequencing using Illumina technology.
Nucleic Acids Res. 2009 Oct 8
Croucher NJ, Fookes MC, Perkins TT, Turner DJ, Marguerat SB, Keane T, Quail MA, He M, Assefa S, Bähler J, Kingsley RA, Parkhill J, Bentley SD, Dougan G, Thomson NR
October 8, 2009
-
Sample Quality
An oligo-based Gene Expression offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.).
BMC Genomics. 2009 Oct 12;10:467
Mascarell-Creus A, Cañizares J, Vilarrasa-Blasi J, Mora-García S, Blanca J, Gonzalez-Ibeas D, Saladié M, Roig C, Deleu W, Picó-Silvent B, López-Bigas N, Aranda MA, Garcia-Mas J, Nuez F, Puigdomènech P, Caño-Delgado AI
October 12, 2009
-
Sample Quality
Analysis of transcriptome changes induced by Ptr ToxA in wheat provides insights into the mechanisms of plant susceptibility.
Mol Plant. 2009 Sep;2(5):1067-83. Epub 2009 Jul 7
Pandelova I, Betts MF, Manning VA, Wilhelm LJ, Mockler TC, Ciuffetti LM
September 1, 2009
-
Sample Quality
Lack of evidence for xenotropic murine leukemia virus-related virus(XMRV) in German prostate cancer patients.
Retrovirology. 2009 Oct 16;6:92
Hohn O, Krause H, Barbarotto P, Niederstadt L, Beimforde N, Denner J, Miller K, Kurth R, Bannert N
October 16, 2009
-
Sample Quality
Potential predictive markers of chemotherapy resistance in stage III ovarian serous carcinomas.
BMC Cancer. 2009 Oct 18;9:368
Osterberg L, Levan K, Partheen K, Delle U, Olsson B, Sundfeldt K, Horvath G
October 18, 2009
-
Sample Quality
Identification of actively translated mRNA transcripts in a rat model of early-stage colon carcinogenesis.
Cancer Prev Res (Phila Pa). 2009 Nov;2(11):984-94. Epub 2009 Oct 20
Davidson LA, Wang N, Ivanov I, Goldsby J, Lupton JR, Chapkin RS
November 1, 2009
-
Sample Quality
Genomic and epigenetic evidence for oxytocin receptor deficiency in autism.
BMC Med. 2009 Oct 22;7:62
Gregory SG, Connelly JJ, Towers AJ, Johnson J, Biscocho D, Markunas CA, Lintas C, Abramson RK, Wright HH, Ellis P, Langford CF, Worley G, Delong GR, Murphy SK, Cuccaro ML, Persico A, Pericak-Vance MA
October 22, 2009
-
Sample Quality
An eight-gene blood expression profile predicts the response to infliximab in rheumatoid arthritis.
PLoS One. 2009 Oct 22;4(10):e7556
Julià A, Erra A, Palacio C, Tomas C, Sans X, Barceló P, Marsal S
October 22, 2009
-
Sample Quality
Mechanisms of FUS1/TUSC2 deficiency in mesothelioma and its tumorigenic transcriptional effects.
Mol Cancer. 2009 Oct 24;8:91
Ivanova AV, Ivanov SV, Prudkin L, Nonaka D, Liu Z, Tsao A, Wistuba I, Roth J, Pass HI
October 24, 2009
-
Sample Quality
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons.
BMC Genomics. 2009 Oct 26;10:495
Queiroz R, Benz C, Fellenberg K, Hoheisel JD, Clayton C
October 26, 2009
-
Sample Quality
Genetical genomic determinants of alcohol consumption in rats and humans.
BMC Biol. 2009 Oct 27;7:70
Tabakoff B, Saba L, Printz M, Flodman P, Hodgkinson C, Goldman D, Koob G, Richardson HN, Kechris K, Bell RL, Hübner N, Heinig M, Pravenec M, Mangion J, Legault L, Dongier M, Conigrave KM, Whitfield JB, Saunders J, Grant B, Hoffman PL; WHO/ISBRA Study on State and Trait Markers of Alcoholism
October 27, 2009
-
sample quality
Proteomic identification of putative biomarkers of radiotherapy resistance: a possible role for the 26S proteasome?
Neoplasia. 2009 Nov;11(11):1194-207
Smith L, Qutob O, Watson MB, Beavis AW, Potts D, Welham KJ, Garimella V, Lind MJ, Drew PJ, Cawkwell L
November 1, 2009
-
Sample Quality
Pre-symptomatic development of lower motor neuron connectivity in a mouse model of severe spinal muscular atrophy.
Hum Mol Genet. 2009 Nov 11
Murray LM, Lee S, Bäumer D, Parson SH, Talbot K, Gillingwater TH
November 11, 2009
-
Sample Quality
Anti-schistosomal Intervention Targets Identified by Lifecycle Transcriptomic Analyses.
PLoS Negl Trop Dis. 2009 Nov 3;3(11):e543
Fitzpatrick JM, Peak E, Perally S, Chalmers IW, Barrett J, Yoshino TP, Ivens AC, Hoffmann KF
November 3, 2009
-
Sample Quality
E Unibus Plurum: Genomic Analysis of an Experimentally Evolved Polymorphism in Escherichia coli.
PLoS Genet. 2009 Nov;5(11):e1000713. Epub 2009 Nov 6
Kinnersley MA, Holben WE, Rosenzweig F
November 1, 2009
-
Sample Quality
Functional Analysis of the Quorum-Sensing Streptococcal Invasion Locus (sil).
PLoS Pathog. 2009 Nov;5(11):e1000651. Epub 2009 Nov 6
Belotserkovsky I, Baruch M, Peer A, Dov E, Ravins M, Mishalian I, Persky M, Smith Y, Hanski E
November 1, 2009
-
Sample Quality
Gene expression profiling in sinonasal adenocarcinoma.
BMC Med Genomics. 2009 Nov 10;2:65
Tripodi D, Quéméner S, Renaudin K, Ferron C, Malard O, Guisle-Marsollier I, Sébille-Rivain V, Verger C, Géraut C, Gratas-Rabbia-Ré C
November 10, 2009
-
Sample Quality
Genome scale transcriptome analysis of shoot organogenesis in Populus.
BMC Plant Biol. 2009 Nov 17;9:132
Bao Y, Dharmawardhana P, Mockler TC, Strauss SH
November 17, 2009
-
Sample Quality
Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome.
Nucleic Acids Res. 2009 Nov 18
Albrecht M, Sharma CM, Reinhardt R, Vogel J, Rudel T
November 18, 2009
-
Sample Quality
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces.
BMC Biol. 2009 Nov 20;7:79
Mulder IE, Schmidt B, Stokes CR, Lewis M, Bailey M, Aminov RI, Prosser JI, Gill BP, Pluske JR, Mayer CD, Musk CC, Kelly D
November 20, 2009
-
Sample Quality
Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency.
Am J Physiol Regul Integr Comp Physiol. 2009 Nov 25
Lkhagvadorj S, Qu L, Cai W, Couture OP, Barb CR, Hausman GJ, Nettleton D, Anderson LL, Dekkers JC, Tuggle CK
November 25, 2009
-
Sample Quality
Using transcriptome profiling to characterize QTL regions on chicken chromosome 5.
BMC Genomics. 2009 Dec 2;10(1):575
Le Mignon G, Desert C, Pitel F, Leroux S, Demeure O, Guernec G, Abasht B, Douaire M, Le Roy P, Lagarrigue S
December 2, 2009
-
Sample Quality
Glucocorticoids Stimulate Hepatic and Renal Catecholamine Inactivation by Direct Rapid Induction of the Dopamine Sulfotransferase Sult1d1.
Endocrinology. 2009 Dec 4
Wong S, Tan K, Carey KT, Fukishima A, Tiganis T, Cole TJ
December 4, 2009
-
Sample Quality
NF-kappaB p65-Dependent Transactivation of miRNA Genes following Cryptosporidium parvum Infection Stimulates Epithelial Cell Immune Responses.
PLoS Pathog. 2009 Dec;5(12):e1000681. Epub 2009 Dec 4
Zhou R, Hu G, Liu J, Gong AY, Drescher KM, Chen XM
December 1, 2009
-
Sample Quality, Gene Expression
Identification of direct thyroid hormone response genes reveals the earliest gene regulation programs during frog metamorphosis.
J Biol Chem. 2009 Dec 4;284(49):34167-78. Epub 2009 Sep 28
Das B, Heimeier RA, Buchholz DR, Shi YB
December 4, 2009
-
Sample Quality, Gene Expression
Triptolide is an inhibitor of RNA polymerase I and II-dependent transcription leading predominantly to down-regulation of short-lived mRNA.
Mol Cancer Ther. 2009 Oct;8(10):2780-90. Epub 2009 Oct 6
Vispé S, DeVries L, Créancier L, Besse J, Bréand S, Hobson DJ, Svejstrup JQ, Annereau JP, Cussac D, Dumontet C, Guilbaud N, Barret JM, Bailly C
October 1, 2009
-
Sample Quality, Gene Expression
Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants.
BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S11
Garcia-Reyero N, Adelman IR, Martinovic D, Liu L, Denslow ND
October 8, 2009
-
Sample Quality, Gene Expression
Differential Genomic Responses In Old Vs. Young Humans Despite Similar Levels Of Modest Muscle Damage After Resistance Loading.
Physiol Genomics. 2009 Nov 10
Thalacker-Mercer A, Dell'italia LJ, Cui X, Cross JM, Bamman MM
November 10, 2009
-
Sample Quality, Gene Expression
Time-course of changes in inflammatory markers during a 6-month exercise intervention in sedentary middle-aged men: A randomized-controlled trial.
J Appl Physiol. 2009 Nov 12
Thompson D, Markovitch D, Betts JA, Mazzatti DJ, Turner J, Tyrrell RM
November 12, 2009
-
Sample Quality, Gene Expression
Markedly enhanced colon tumorigenesis in ApcMin mice lacking glutathione S-transferase Pi.
Proc Natl Acad Sci U S A. 2009 Nov 13
Ritchie KJ, Walsh S, Sansom OJ, Henderson CJ, Wolf CR
November 13, 2009
-
Sample Quality, Gene Expression
Endothelial cell responses to atheroprone flow are driven by two separate flow components, low time-average shear stress and fluid flow reversal.
Am J Physiol Heart Circ Physiol. 2009 Nov 13
Conway DE, Williams MR, Eskin SG, McIntire LV
November 13, 2009
-
Sample Quality, Gene Expression
Th22 cells represent a distinct human T cell subset involved in epidermal immunity and remodeling.
J Clin Invest. 2009 Dec;119(12):3573-85. doi: 10.1172/JCI40202. Epub 2009 Nov 16
Eyerich S, Eyerich K, Pennino D, Carbone T, Nasorri F, Pallotta S, Cianfarani F, Odorisio T, Traidl-Hoffmann C, Behrendt H, Durham SR, Schmidt-Weber CB, Cavani A
December 1, 2009
-
Sample Quality, GeneSpring
Expression profiling of skeletal muscle following acute and chronic beta2-adrenergic stimulation: implications for hypertrophy, metabolism and circadian rhythm.
BMC Genomics. 2009 Sep 23;10:448
Pearen MA, Ryall JG, Lynch GS, Muscat GE
September 23, 2009
-
Sample Quality, GeneSpring
Brugia malayi Gene Expression in Response to the Targeting of the Wolbachia Endosymbiont by Tetracycline Treatment.
PLoS Negl Trop Dis. 2009 Oct 6;3(10):e525
Ghedin E, Hailemariam T, Depasse JV, Zhang X, Oksov Y, Unnasch TR, Lustigman S
October 6, 2009
-
Sample Quality, GeneSpring
Expression profiling of formalin-fixed paraffin embedded primary human uveal melanomas using DASL matrices.
J Cancer Res Clin Oncol. 2009 Oct 13
Di Cesare S, Nantel A, Marshall JC, Fernandes BF, Antecka E, Orellana ME, Abourbih D, Saornil AM, Burnier MN Jr
October 13, 2009
-
Sample Quality, GeneSpring
PU.1 activation relieves GATA-1-mediated repression of Cebpa and Cbfb during leukemia differentiation.
Mol Cancer Res. 2009 Oct;7(10):1693-703. Epub 2009 Oct 13
Burda P, Curik N, Kokavec J, Basova P, Mikulenkova D, Skoultchi AI, Zavadil J, Stopka T
October 1, 2009
-
Sample Quality, GeneSpring
Transcriptional and Functional Analysis of the Neisseria gonorrhoeae Fur Regulon.
J Bacteriol. 2009 Oct 23
Jackson LA, Ducey TF, Day MW, Zaitshik JB, Orvis J, Dyer DW
October 23, 2009
-
Sample Quality, GeneSpring
Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium.
BMC Mol Biol. 2009 Nov 1;10:100
Walker CG, Meier S, Mitchell MD, Roche JR, Littlejohn M
November 1, 2009
-
Sample Quality, GeneSpring
In Vivo Targeting of the Growth Hormone Receptor (GHR) Box1 Sequence Demonstrates that the GHR Does Not Signal Exclusively through JAK2.
Mol Endocrinol. 2009 Nov 2
Barclay JL, Kerr LM, Arthur L, Rowland JE, Nelson CN, Ishikawa M, d'Aniello EM, White M, Noakes PG, Waters MJ
November 2, 2009
-
Sample Quality, GeneSpring
SCF, BDNF, and Gas6 Are Regulators of Growth Plate Chondrocyte Proliferation and Differentiation.
Mol Endocrinol. 2009 Nov 6
Hutchison MR, Bassett MH, White PC
November 6, 2009
-
Sample Quality, GeneSpring
Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation.
Mol Plant. 2009 Nov;2(6):1233-46
Stettler M, Eicke S, Mettler T, Messerli G, Hörtensteiner S, Zeeman SC
November 1, 2009
-
Target Enrichment
Enrichment of sequencing targets from the human genome by solution hybridization.
Genome Biol. 2009;10(10):R116. Epub 2009 Oct 16
Tewhey R, Nakano M, Wang X, Pabón-Peña C, Novak B, Giuffre A, Lin E, Happe S, Roberts DN, LeProust EM, Topol EJ, Harismendy O, Frazer KA
January 1, 2009
-
Target enrichment
Mutations in SCARF2 are responsible for Van Den Ende-Gupta syndrome.
Am J Hum Genet 87(4): 553-559.
Anastasio, N., T. Ben-Omran, et al. (2010).
-
Target enrichment
Whole-Exome-Sequencing-Based Discovery of Human FADD Deficiency.
Am J Hum Genet 87(6): 873-881.
Bolze, A., M. Byun, et al. (2010).
-
Target enrichment
Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome.
PLoS One 5(10): e13630.
Bonnefond, A., E. Durand, et al. (2010).
-
Target enrichment
Molecular basis of a linkage peak: exome sequencing and family-based analysis identify a rare genetic variant in the ADIPOQ gene in the IRAS Family Study.
Hum Mol Genet 19(20): 4112-4120.
Bowden, D. W., S. S. An, et al. (2010).
-
Target enrichment
Whole-exome sequencing-based discovery of STIM1 deficiency in a child with fatal classic Kaposi sarcoma.
J Exp Med 207(11): 2307-2312.
Byun, M., A. Abhyankar, et al. (2010).
-
Target enrichment
Targeted next-generation sequencing of DNA regions proximal to a conserved GXGXXG signaling motif enables systematic discovery of tyrosine kinase fusions in cancer.
Nucleic Acids Res 38(20): 6985-6996.
Chmielecki, J., M. Peifer, et al. (2010).
-
Target enrichment
Exome sequencing identifies WDR35 variants involved in Sensenbrenner syndrome.
Am J Hum Genet 87(3): 418-423.
Gilissen, C., H. H. Arts, et al. (2010).
-
Target enrichment
Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency.
Nat Genet 42(12): 1131-1134.
Haack, T. B., K. Danhauser, et al. (2010).
-
Target enrichment
De novo mutations of SETBP1 cause Schinzel-Giedion syndrome.
Nat Genet 42(6): 483-485.
Hoischen, A., B. W. van Bon, et al. (2010).
-
Target enrichment
Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate.
Am J Hum Genet 86(5): 743-748.
Johnston, J. J., J. K. Teer, et al. (2010).
-
Target enrichment
Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.
Science 330(6001): 228-231.
Jones, S., T. L. Wang, et al. (2010).
-
Target enrichment
CEP152 is a genome maintenance protein disrupted in Seckel syndrome.
Nat Genet.
Kalay, E., G. Yigit, et al. (2010).
-
Target enrichment
Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome.
Nat Genet 42(10): 827-829.
Krawitz, P. M., M. R. Schweiger, et al. (2010).
-
Target enrichment
Unexpected allelic heterogeneity and spectrum of mutations in Fowler syndrome revealed by next-generation exome sequencing.
Hum Mutat 31(8): 918-923.
Lalonde, E., S. Albrecht, et al. (2010).
-
Target enrichment
Targeted Massively Parallel Sequencing of Maternal Plasma DNA Permits Efficient and Unbiased Detection of Fetal Alleles.
Clin Chem.
Liao, G. J., F. M. Lun, et al. (2010).
-
Target enrichment
Novel homo- and hemizygous mutations in EZH2 in myeloid malignancies.
Leukemia 24(10): 1799-1804.
Makishima, H., A. M. Jankowska, et al. (2010).
-
Target enrichment
Exome sequencing, ANGPTL3 mutations, and familial combined hypolipidemia.
N Engl J Med 363(23): 2220-2227.
Musunuru, K., J. P. Pirruccello, et al. (2010).
-
Target enrichment
Genomic-scale capture and sequencing of endogenous DNA from feces.
Mol Ecol 19(24): 5332-5344.
Perry, G. H., J. C. Marioni, et al. (2010).
-
Target enrichment
Mutations in the DBP-deficiency protein HSD17B4 cause ovarian dysgenesis, hearing loss, and ataxia of Perrault Syndrome.
Am J Hum Genet 87(2): 282-288.
Pierce, S. B., T. Walsh, et al. (2010).
-
Target enrichment
Mutations in FLVCR1 cause posterior column ataxia and retinitis pigmentosa.
Am J Hum Genet 87(5): 643-654.
Rajadhyaksha, A. M., O. Elemento, et al. (2010).
-
Target enrichment
Comprehensive genetic testing for hereditary hearing loss using massively parallel sequencing.
Proc Natl Acad Sci U S A 107(49): 21104-21109.
Shearer, A. E., A. P. Deluca, et al. (2010).
-
Target enrichment
MASP1 mutations in patients with facial, umbilical, coccygeal, and auditory findings of Carnevale, Malpuech, OSA, and Michels syndromes.
Am J Hum Genet 87(5): 679-686.
Sirmaci, A., T. Walsh, et al. (2010).
-
Target enrichment
Terminal osseous dysplasia is caused by a single recurrent mutation in the FLNA gene.
Am J Hum Genet 87(1): 146-153.
Sun, Y., R. Almomani, et al. (2010).
-
Target enrichment
PHF6 mutations in T-cell acute lymphoblastic leukemia.
Nat Genet 42(4): 338-342.
Van Vlierberghe, P., T. Palomero, et al. (2010).
-
Target enrichment
A de novo paradigm for mental retardation.
Nat Genet 42(12): 1109-1112.
Vissers, L. E., J. de Ligt, et al. (2010).
-
Target enrichment
Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing.
Proc Natl Acad Sci U S A 107(28): 12629-12633.
Walsh, T., M. K. Lee, et al. (2010).
-
Target enrichment
Whole exome sequencing and homozygosity mapping identify mutation in the cell polarity protein GPSM2 as the cause of nonsyndromic hearing loss DFNB82.
Am J Hum Genet 87(1): 90-94.
Walsh, T., H. Shahin, et al. (2010).
KategorieLiteratura
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